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Cerbini, T.; Funahashi, R.; Luo, Y.; Liu, C.; Park, K.; Rao, M.; Malik, N.; Zou, J. |
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Title |
Transcription activator-like effector nuclease (TALEN)-mediated CLYBL targeting enables enhanced transgene expression and one-step generation of dual reporter human induced pluripotent stem cell (iPSC) and neural stem cell (NSC) lines |
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Journal Article |
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Year |
2015 |
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PloS one |
Abbreviated Journal |
PLoS One |
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Volume |
10 |
Issue |
1 |
Pages  |
e0116032 |
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Keywords |
Cell Line; Endonucleases/*genetics; Gene Targeting/*methods; Humans; Induced Pluripotent Stem Cells/*cytology/metabolism; Neural Stem Cells/*cytology/metabolism; Transgenes/genetics |
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Abstract |
Targeted genome engineering to robustly express transgenes is an essential methodology for stem cell-based research and therapy. Although designer nucleases have been used to drastically enhance gene editing efficiency, targeted addition and stable expression of transgenes to date is limited at single gene/locus and mostly PPP1R12C/AAVS1 in human stem cells. Here we constructed transcription activator-like effector nucleases (TALENs) targeting the safe-harbor like gene CLYBL to mediate reporter gene integration at 38%-58% efficiency, and used both AAVS1-TALENs and CLYBL-TALENs to simultaneously knock-in multiple reporter genes at dual safe-harbor loci in human induced pluripotent stem cells (iPSCs) and neural stem cells (NSCs). The CLYBL-TALEN engineered cell lines maintained robust reporter expression during self-renewal and differentiation, and revealed that CLYBL targeting resulted in stronger transgene expression and less perturbation on local gene expression than PPP1R12C/AAVS1. TALEN-mediated CLYBL engineering provides improved transgene expression and options for multiple genetic modification in human stem cells. |
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NIH Center for Regenerative Medicine, Laboratory of Stem Cell Biology, National Institute of Arthritis, Musculoskeletal and Skin Diseases, Bethesda, Maryland, United States of America; Center for Molecular Medicine, Division of Intramural Research, National Heart, Lung, and Blood Institute, Bethesda, Maryland, United States of America |
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1932-6203 |
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PMID:25587899; PMCID:PMC4294658 |
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refbase @ user @ |
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16789 |
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Padilla, W.J.; Taylor, A.J.; Highstrete, C.; Lee, M.; Averitt, R.D. |
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Title |
Dynamical electric and magnetic metamaterial response at terahertz frequencies |
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Journal Article |
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Year |
2006 |
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Physical review letters |
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96 |
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10 |
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107401 |
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refbase @ user @ padilla2006dynamical |
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12852 |
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Wattanapanitch, M.; Klincumhom, N.; Potirat, P.; Amornpisutt, R.; Lorthongpanich, C.; U-pratya, Y.; Laowtammathron, C.; Kheolamai, P.; Poungvarin, N.; Issaragrisil, S. |
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Title |
Dual small-molecule targeting of SMAD signaling stimulates human induced pluripotent stem cells toward neural lineages |
Type |
Journal Article |
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Year |
2014 |
Publication |
PloS one |
Abbreviated Journal |
PLoS One |
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Volume |
9 |
Issue |
9 |
Pages |
e106952 |
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Keywords |
Amides/pharmacology; Benzamides/pharmacology; Biomarkers/metabolism; Carrier Proteins/pharmacology; Cell Differentiation; Cells, Cultured; Cellular Reprogramming/drug effects/*genetics; Dermis/cytology/drug effects/metabolism; Dioxoles/pharmacology; Fibroblasts/cytology/drug effects/metabolism; Gene Expression; Histone Deacetylases/genetics/metabolism; Humans; Induced Pluripotent Stem Cells/*cytology/drug effects/metabolism; Karyotyping; Neural Stem Cells/*cytology/drug effects/metabolism; Neurons/*cytology/drug effects/metabolism; Pyridines/pharmacology; Signal Transduction; Smad Proteins/antagonists & inhibitors/genetics/*metabolism; Valproic Acid/pharmacology; rho-Associated Kinases/antagonists & inhibitors/genetics/metabolism |
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Abstract |
Incurable neurological disorders such as Parkinson's disease (PD), Huntington's disease (HD), and Alzheimer's disease (AD) are very common and can be life-threatening because of their progressive disease symptoms with limited treatment options. To provide an alternative renewable cell source for cell-based transplantation and as study models for neurological diseases, we generated induced pluripotent stem cells (iPSCs) from human dermal fibroblasts (HDFs) and then differentiated them into neural progenitor cells (NPCs) and mature neurons by dual SMAD signaling inhibitors. Reprogramming efficiency was improved by supplementing the histone deacethylase inhibitor, valproic acid (VPA), and inhibitor of p160-Rho associated coiled-coil kinase (ROCK), Y-27632, after retroviral transduction. We obtained a number of iPS colonies that shared similar characteristics with human embryonic stem cells in terms of their morphology, cell surface antigens, pluripotency-associated gene and protein expressions as well as their in vitro and in vivo differentiation potentials. After treatment with Noggin and SB431542, inhibitors of the SMAD signaling pathway, HDF-iPSCs demonstrated rapid and efficient differentiation into neural lineages. Six days after neural induction, neuroepithelial cells (NEPCs) were observed in the adherent monolayer culture, which had the ability to differentiate further into NPCs and neurons, as characterized by their morphology and the expression of neuron-specific transcripts and proteins. We propose that our study may be applied to generate neurological disease patient-specific iPSCs allowing better understanding of disease pathogenesis and drug sensitivity assays. |
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Siriraj Center of Excellence for Stem Cell Research, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok, Thailand; Division of Hematology, Department of Medicine, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok, Thailand |
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English |
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1932-6203 |
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PMID:25207966; PMCID:PMC4160199 |
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refbase @ user @ |
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16807 |
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Abbott, B.P.; Abbott, R.; Adhikari, R.; Ajith, P.; Allen, B.; Allen, G.; Amin, R.S.; Anderson, S.B.; Anderson, W.G.; Arain, M.A.; Araya, M.; Armandula, H.; Armor, P.; Aso, Y.; Aston, S.; Aufmuth, P.; Aulbert, C.; Babak, S.; Baker, P.; Ballmer, S.; Barker, C.; Barker, D.; Barr, B.; Barriga, P.; Barsotti, L.; Barton, M.A.; Bartos, I.; Bassiri, R.; Bastarrika, M.; Behnke, B.; Benacquista, M.; Betzwieser, J.; Beyersdorf, P.T.; Bilenko, I.A.; Billingsley, G.; Biswas, R.; Black, E.; Blackburn, J.K.; Blackburn, L.; Blair, D.; Bland, B.; Bodiya, T.P.; Bogue, L.; Bork, R.; Boschi, V.; Bose, S.; Brady, P.R.; Braginsky, V.B.; Brau, J.E.; Bridges, D.O.; Brinkmann, M.; Brooks, A.F.; Brown, D.A.; Brummit, A.; Brunet, G.; Bullington, A.; Buonanno, A.; Burmeister, O.; Byer, R.L.; Cadonati, L.; Camp, J.B.; Cannizzo, J.; Cannon, K.C.; Cao, J.; Cardenas, L.; Caride, S.; Castaldi, G.; Caudill, S.; Cavaglia, M.; Cepeda, C.; Chalermsongsak, T.; Chalkley, E.; Charlton, P.; Chatterji, S.; Chelkowski, S.; Chen, Y.; Christensen, N.; Chung, C.T.Y.; Clark, D.; Clark, J.; Clayton, J.H.; Cokelaer, T.; Colacino, C.N.; Conte, R.; Cook, D.; Corbitt, T.R.C.; Cornish, N.; Coward, D.; Coyne, D.C.; Di Credico, A.; Creighton, J.D.E.; Creighton, T.D.; Cruise, A.M.; Culter, R.M.; Cumming, A.; Cunningham, L.; Danilishin, S.L.; Danzmann, K.; Daudert, B.; Davies, G.; Daw, E.J.; DeBra, D.; Degallaix, J.; Dergachev, V.; Desai, S.; DeSalvo, R.; Dhurandhar, S.; Diaz, M.; Dietz, A.; Donovan, F.; Dooley, K.L.; Doomes, E.E.; Drever, R.W.P.; Dueck, J.; Duke, I.; Dumas, J.C.; Dwyer, J.G.; Echols, C.; Edgar, M.; Effler, A.; Ehrens, P.; Espinoza, E.; Etzel, T.; Evans, M.; Evans, T.; Fairhurst, S.; Faltas, Y.; Fan, Y.; Fazi, D.; Fehrmann, H.; Finn, L.S.; Flasch, K.; Foley, S.; Forrest, C.; Fotopoulos, N.; Franzen, A.; Frede, M.; Frei, M.; Frei, Z.; Freise, A.; Frey, R.; Fricke, T.; Fritschel, P.; Frolov, V.V.; Fyffe, M.; Galdi, V.; Garofoli, J.A.; Gholami, I.; Giaime, J.A.; Giampanis, S.; Giardina, K.D.; Goda, K.; Goetz, E.; Goggin, L.M.; Gonzalez, G.; Gorodetsky, M.L.; Gossler, S.; Gouaty, R.; Grant, A.; Gras, S.; Gray, C.; Gray, M.; Greenhalgh, R.J.S.; Gretarsson, A.M.; Grimaldi, F.; Grosso, R.; Grote, H.; Grunewald, S.; Guenther, M.; Gustafson, E.K.; Gustafson, R.; Hage, B.; Hallam, J.M.; Hammer, D.; Hammond, G.D.; Hanna, C.; Hanson, J.; Harms, J.; Harry, G.M.; Harry, I.W.; Harstad, E.D.; Haughian, K.; Hayama, K.; Heefner, J.; Heng, I.S.; Heptonstall, A.; Hewitson, M.; Hild, S.; Hirose, E.; Hoak, D.; Hodge, K.A.; Holt, K.; Hosken, D.J.; Hough, J.; Hoyland, D.; Hughey, B.; Huttner, S.H.; Ingram, D.R.; Isogai, T.; Ito, M.; Ivanov, A.; Johnson, B.; Johnson, W.W.; Jones, D.I.; Jones, G.; Jones, R.; Ju, L.; Kalmus, P.; Kalogera, V.; Kandhasamy, S.; Kanner, J.; Kasprzyk, D.; Katsavounidis, E.; Kawabe, K.; Kawamura, S.; Kawazoe, F.; Kells, W.; Keppel, D.G.; Khalaidovski, A.; Khalili, F.Y.; Khan, R.; Khazanov, E.; King, P.; Kissel, J.S.; Klimenko, S.; Kokeyama, K.; Kondrashov, V.; Kopparapu, R.; Koranda, S.; Kozak, D.; Krishnan, B.; Kumar, R.; Kwee, P.; Lam, P.K.; Landry, M.; Lantz, B.; Lazzarini, A.; Lei, H.; Lei, M.; Leindecker, N.; Leonor, I.; Li, C.; Lin, H.; Lindquist, P.E.; Littenberg, T.B.; Lockerbie, N.A.; Lodhia, D.; Longo, M.; Lormand, M.; Lu, P.; Lubinski, M.; Lucianetti, A.; Lueck, H.; Machenschalk, B.; MacInnis, M.; Mageswaran, M.; Mailand, K.; Mandel, I.; Mandic, V.; Marka, S.; Marka, Z.; Markosyan, A.; Markowitz, J.; Maros, E.; Martin, I.W.; Martin, R.M.; Marx, J.N.; Mason, K.; Matichard, F.; Matone, L.; Matzner, R.A.; Mavalvala, N.; McCarthy, R.; McClelland, D.E.; McGuire, S.C.; McHugh, M.; McIntyre, G.; McKechan, D.J.A.; McKenzie, K.; Mehmet, M.; Melatos, A.; Melissinos, A.C.; Menendez, D.F.; Mendell, G.; Mercer, R.A.; Meshkov, S.; Messenger, C.; Meyer, M.S.; Miller, J.; Minelli, J.; Mino, Y.; Mitrofanov, V.P.; Mitselmakher, G.; Mittleman, R.; Miyakawa, O.; Moe, B.; Mohanty, S.D.; Mohapatra, S.R.P.; Moreno, G.; Morioka, T.; Mors, K.; Mossavi, K.; MowLowry, C.; Mueller, G.; Muller-Ebhardt, H.; Muhammad, D.; Mukherjee, S.; Mukhopadhyay, H.; Mullavey, A.; Munch, J.; Murray, P.G.; Myers, E.; Myers, J.; Nash, T.; Nelson, J.; Newton, G.; Nishizawa, A.; Numata, K.; ODell, J.; OReilly, B.; OShaughnessy, R.; Ochsner, E.; Ogin, G.H.; Ottaway, D.J.; Ottens, R.S.; Overmier, H.; Owen, B.J.; Pan, Y.; Pankow, C.; Papa, M.A.; Parameshwaraiah, V.; Patel, P.; Pedraza, M.; Penn, S.; Perraca, A.; Pierro, V.; Pinto, I.M.; Pitkin, M.; Pletsch, H.J.; Plissi, M.V.; Postiglione, F.; Principe, M.; Prix, R.; Prokhorov, L.; Puncken, O.; Quetschke, V.; Raab, F.J.; Rabeling, D.S.; Radkins, H.; Raffai, P.; Raics, Z.; Rainer, N.; Rakhmanov, M.; Raymond, V.; Reed, C.M.; Reed, T.; Rehbein, H.; Reid, S.; Reitze, D.H.; Riesen, R.; Riles, K.; Rivera, B.; Roberts, P.; Robertson, N.A.; Robinson, C.; Robinson, E.L.; Roddy, S.; Roever, C.; Rollins, J.; Romano, J.D.; Romie, J.H.; Rowan, S.; Rudiger, A.; Russell, P.; Ryan, K.; Sakata, S.; Sancho de la Jordana, L.; Sandberg, V.; Sannibale, V.; Santamaria, L.; Saraf, S.; Sarin, P.; Sathyaprakash, B.S.; Sato, S.; Satterthwaite, M.; Saulson, P.R.; Savage, R.; Savov, P.; Scanlan, M.; Schilling, R.; Schnabel, R.; Schofield, R.; Schulz, B.; Schutz, B.F.; Schwinberg, P.; Scott, J.; Scott, S.M.; Searle, A.C.; Sears, B.; Seifert, F.; Sellers, D.; Sengupta, A.S.; Sergeev, A.; Shapiro, B.; Shawhan, P.; Shoemaker, D.H.; Sibley, A.; Siemens, X.; Sigg, D.; Sinha, S.; Sintes, A.M.; Slagmolen, B.J.J.; Slutsky, J.; Smith, J.R.; Smith, M.R.; Smith, N.D.; Somiya, K.; Sorazu, B.; Stein, A.; Stein, L.C.; Steplewski, S.; Stochino, A.; Stone, R.; Strain, K.A.; Strigin, S.; Stroeer, A.; Stuver, A.L.; Summerscales, T.Z.; Sun, K.X.; Sung, M.; Sutton, P.J.; Szokoly, G.P.; Talukder, D.; Tang, L.; Tanner, D.B.; Tarabrin, S.P.; Taylor, J.R.; Taylor, R.; Thacker, J.; Thorne, K.A.; Thorne, K.S.; Thuring, A.; Tokmakov, K.V.; Torres, C.; Torrie, C.; Traylor, G.; Trias, M.; Ugolini, D.; Ulmen, J.; Urbanek, K.; Vahlbruch, H.; Vallisneri, M.; Van Den Broeck, C.; van der Sluys, M.V.; van Veggel, A.A.; Vass, S.; Vaulin, R.; Vecchio, A.; Veitch, J.; Veitch, P.; Veltkamp, C.; Villadsen, J.; Villar, A.; Vorvick, C.; Vyachanin, S.P.; Waldman, S.J.; Wallace, L.; Ward, R.L.; Weidner, A.; Weinert, M.; Weinstein, A.J.; Weiss, R.; Wen, L.; Wen, S.; Wette, K.; Whelan, J.T.; Whitcomb, S.E.; Whiting, B.F.; Wilkinson, C.; Willems, P.A.; Williams, H.R.; Williams, L.; Willke, B.; Wilmut, I.; Winkelmann, L.; Winkler, W.; Wipf, C.C.; Wiseman, A.G.; Woan, G.; Wooley, R.; Worden, J.; Wu, W.; Yakushin, I.; Yamamoto, H.; Yan, Z.; Yoshida, S.; Zanolin, M.; Zhang, J.; Zhang, L.; Zhao, C.; Zotov, N.; Zucker, M.E.; zur Muehlen, H.; Zweizig, J.; Collaboration, the L.I.G.O.S. |
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Title |
Search for high frequency gravitational-wave bursts in the first calendar year of LIGOs fifth science run |
Type |
Journal Article |
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Year |
2009 |
Publication |
Physical Review D |
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80 |
Issue |
10 |
Pages |
102002 |
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One Physics Ellipse, College Pk, Md 20740-3844 Usa |
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1550-7998 |
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refbase @ admin @ Abbott2009m |
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12843 |
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Abbott, B.P.; Abbott, R.; Adhikari, R.; Ajith, P.; Allen, B.; Allen, G.; Amin, R.S.; Anderson, S.B.; Anderson, W.G.; Arain, M.A.; Araya, M.; Armandula, H.; Armor, P.; Aso, Y.; Aston, S.; Aufmuth, P.; Aulbert, C.; Babak, S.; Baker, P.; Ballmer, S.; Barker, C.; Barker, D.; Barr, B.; Barriga, P.; Barsotti, L.; Barton, M.A.; Bartos, I.; Bassiri, R.; Bastarrika, M.; Behnke, B.; Benacquista, M.; Betzwieser, J.; Beyersdorf, P.T.; Bilenko, I.A.; Billingsley, G.; Biswas, R.; Black, E.; Blackburn, J.K.; Blackburn, L.; Blair, D.; Bland, B.; Bodiya, T.P.; Bogue, L.; Bork, R.; Boschi, V.; Bose, S.; Brady, P.R.; Braginsky, V.B.; Brau, J.E.; Bridges, D.O.; Brinkmann, M.; Brooks, A.F.; Brown, D.A.; Brummit, A.; Brunet, G.; Bullington, A.; Buonanno, A.; Burmeister, O.; Byer, R.L.; Cadonati, L.; Camp, J.B.; Cannizzo, J.; Cannon, K.C.; Cao, J.; Cardenas, L.; Caride, S.; Castaldi, G.; Caudill, S.; Cavaglia, M.; Cepeda, C.; Chalermsongsak, T.; Chalkley, E.; Charlton, P.; Chatterji, S.; Chelkowski, S.; Chen, Y.; Christensen, N.; Chung, C.T.Y.; Clark, D.; Clark, J.; Clayton, J.H.; Cokelaer, T.; Colacino, C.N.; Conte, R.; Cook, D.; Corbitt, T.R.C.; Cornish, N.; Coward, D.; Coyne, D.C.; Creighton, J.D.E.; Creighton, T.D.; Cruise, A.M.; Culter, R.M.; Cumming, A.; Cunningham, L.; Danilishin, S.L.; Danzmann, K.; Daudert, B.; Davies, G.; Daw, E.J.; DeBra, D.; Degallaix, J.; Dergachev, V.; Desai, S.; DeSalvo, R.; Dhurandhar, S.; Diaz, M.; Di Credico, A.; Dietz, A.; Donovan, F.; Dooley, K.L.; Doomes, E.E.; Drever, R.W.P.; Dueck, J.; Duke, I.; Dumas, J.C.; Dwyer, J.G.; Echols, C.; Edgar, M.; Effler, A.; Ehrens, P.; Espinoza, E.; Etzel, T.; Evans, M.; Evans, T.; Fairhurst, S.; Faltas, Y.; Fan, Y.; Fazi, D.; Fehrmann, H.; Finn, L.S.; Flasch, K.; Foley, S.; Forrest, C.; Fotopoulos, N.; Franzen, A.; Frede, M.; Frei, M.; Frei, Z.; Freise, A.; Frey, R.; Fricke, T.; Fritschel, P.; Frolov, V.V.; Fyffe, M.; Galdi, V.; Garofoli, J.A.; Gholami, I.; Giaime, J.A.; Giampanis, S.; Giardina, K.D.; Goda, K.; Goetz, E.; Goggin, L.M.; Gonzalez, G.; Gorodetsky, M.L.; Gossler, S.; Gouaty, R.; Grant, A.; Gras, S.; Gray, C.; Gray, M.; Greenhalgh, R.J.S.; Gretarsson, A.M.; Grimaldi, F.; Grosso, R.; Grote, H.; Grunewald, S.; Guenther, M.; Gustafson, E.K.; Gustafson, R.; Hage, B.; Hallam, J.M.; Hammer, D.; Hammond, G.D.; Hanna, C.; Hanson, J.; Harms, J.; Harry, G.M.; Harry, I.W.; Harstad, E.D.; Haughian, K.; Hayama, K.; Heefner, J.; Heng, I.S.; Heptonstall, A.; Hewitson, M.; Hild, S.; Hirose, E.; Hoak, D.; Hodge, K.A.; Holt, K.; Hosken, D.J.; Hough, J.; Hoyland, D.; Hughey, B.; Huttner, S.H.; Ingram, D.R.; Isogai, T.; Ito, M.; Ivanov, A.; Johnson, B.; Johnson, W.W.; Jones, D.I.; Jones, G.; Jones, R.; Ju, L.; Kalmus, P.; Kalogera, V.; Kandhasamy, S.; Kanner, J.; Kasprzyk, D.; Katsavounidis, E.; Kawabe, K.; Kawamura, S.; Kawazoe, F.; Kells, W.; Keppel, D.G.; Khalaidovski, A.; Khalili, F.Y.; Khan, R.; Khazanov, E.; King, P.; Kissel, J.S.; Klimenko, S.; Kokeyama, K.; Kondrashov, V.; Kopparapu, R.; Koranda, S.; Kozak, D.; Krishnan, B.; Kumar, R.; Kwee, P.; Lam, P.K.; Landry, M.; Lantz, B.; Lazzarini, A.; Lei, H.; Lei, M.; Leindecker, N.; Leonor, I.; Li, C.; Lin, H.; Lindquist, P.E.; Littenberg, T.B.; Lockerbie, N.A.; Lodhia, D.; Longo, M.; Lormand, M.; Lu, P.; Lubinski, M.; Lucianetti, A.; Lueck, H.; Machenschalk, B.; MacInnis, M.; Mageswaran, M.; Mailand, K.; Mandel, I.; Mandic, V.; Marka, S.; Marka, Z.; Markosyan, A.; Markowitz, J.; Maros, E.; Martin, I.W.; Martin, R.M.; Marx, J.N.; Mason, K.; Matichard, F.; Matone, L.; Matzner, R.A.; Mavalvala, N.; McCarthy, R.; McClelland, D.E.; McGuire, S.C.; McHugh, M.; McIntyre, G.; McKechan, D.J.A.; McKenzie, K.; Mehmet, M.; Melatos, A.; Melissinos, A.C.; Menendez, D.F.; Mendell, G.; Mercer, R.A.; Meshkov, S.; Messenger, C.; Meyer, M.S.; Miller, J.; Minelli, J.; Mino, Y.; Mitrofanov, V.P.; Mitselmakher, G.; Mittleman, R.; Miyakawa, O.; Moe, B.; Mohanty, S.D.; Mohapatra, S.R.P.; Moreno, G.; Morioka, T.; Mors, K.; Mossavi, K.; MowLowry, C.; Mueller, G.; Mueller-Ebhardt, H.; 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Title |
Search for gravitational-wave bursts in the first year of the fifth LIGO science run |
Type |
Journal Article |
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Year |
2009 |
Publication |
Physical Review D |
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Volume |
80 |
Issue |
10 |
Pages |
102001 |
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Place of Publication |
One Physics Ellipse, College Pk, Md 20740-3844 Usa |
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ISSN |
1550-7998 |
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Call Number |
refbase @ admin @ Abbott2009l |
Serial |
12842 |
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